Publications and Preprints

1. Hayir, E., Crawford, L., Lu, A. X. (2026). MorphoHELM: A Comprehensive Benchmark for Evaluating Representations for Microscopy-Based Morphology Assays. arXiv:2605.15383.

2. Yu, Y., Hayir, E., Tenenholtz, N., Mackey, L., Wei, Y., Alvarez-Melis, D., Amini, A. P., Lu, A. X. (2026). Integrating chemical structures as treatments improves representations of microscopy images for morphological profiling. PLOS Computational Biology, 22(7), e1014483. doi:10.1371/journal.pcbi.1014483

3. Kambhampati, S., Zimmermann, E., Hayir, E., Yang, K. K., Chen, F., Lu, A. X. (2026). Vermeer: Autoregressive generative modeling of microscopy predicts protein localization. bioRxiv.